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The dynamics \begin{align*} \frac{dS_t}{S_t} =\mu dt + \sigma dW_t. \end{align*} is under the real-world measure $\mathbb{P}$. Then, \begin{align*} d\ln S_t =\Big(\mu-\frac{1}{2}\sigma^2 \Big) dt + \sigma dW_t. \end{align*} Therefore, \begin{align*} \ln S_T = \ln S_t + \Big(\mu-\frac{1}{2}\sigma^2 \Big)(T-t) + \sigma \big(W_T-W_t\big).\tag{1} \end{align*} ...


We assume that $\gamma(s, t)$ is differentiable with respect to $t$. Then, \begin{align*} dx_t = \left(\int_0^t \frac{\partial\gamma(s, t)}{\partial t} dW_s \right)dt + \gamma(t, t) dW_t. \end{align*}


Royden's "Real Analysis" is a standard textbook for a first year grad course in Real Analysis. It covers all the integration topics nicely. A more stochastically oriented book would be "Probability with Martingales" by Williams, which covers integration as well.

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