All factor returns (including "passive" factors like equity premium, credit premium etc) should be assessed using the fairest possible basis for comparison - self-financing portfolios.
For a passive long-only investment, that is equivalent to the total return on the asset class minus the risk-free rate. For a tradable factor premium, that means constructing long-short portfolios to isolate the factor (e.g. buy cheap stocks, sell expensive stocks with the same dollar value).
The assumption is that you can borrow or invest cash at the risk-free rate, and that any self-financing portfolio can be leveraged as much as necessary by borrowing. I'd add a few comments to this -
- If you are assuming that you can borrow or lend at the risk-free rate, you are free to compare strategies using risk-adjusted returns (e.g. using the Sharpe ratio) because low volatility strategies (e.g. bonds) can be leveraged to the same volatility as high volatility strategies (e.g. equities)
- In reality you can't borrow or lend at the risk free rate. The spread between what you can borrow at or what you can invest at is the cost of leverage.
- For some factors, particularly low-volatility, low-beta or defensive factors, it is difficult to construct a self-financing portfolio by being long/short stocks with the same dollar value. This is because you are also trying to construct a zero beta portfolio (to avoid loading on the equity risk premium) which means that you want your long portfolio (low beta stocks) to have a larger dollar value than your short portfolio (high beta stocks).
- Related to point 2. - the existence of a cost of leverage (either purely financial, or regulatory/risk-aversion) is often cited as the reason for the existence of the low-beta premium in the first place.
It doesn't make much sense to compare a zero beta factor portfolio to the performance of a beta one equity investment, because the strategies are uncorrelated by design. Of course, you can compare them, as you can compare any two things (even apples and oranges) but you don't learn much.
Who cares if a zero beta value strategy is outperformed by a long-only equity investment? These are different strategies, capturing different risk premiums. In different time periods, one or the other will outperform. A beta zero strategy is not designed to provide "equity exposure plus alpha". It is best thought of as an entirely separate return stream, which it is possible to isolate and make an entirely separate allocation to.
--
Note that the definition of the equity risk premium -
$$R_{\rm ERP} = R_{\rm Stocks} - R_{\textrm{Treasury Bills}}$$
is not "how much do I earn if I invest in stocks instead of bonds". Rather, it is how much do I earn if I invest in stocks instead of risk-free instruments, where "risk-free instruments" are proxied by Treasury bills.
There is an entirely separate bond risk premium representing the compensation for bearing interest rate risk (and possibly sovereign default risk) which might be written
$$R_{\rm BRP} = R_{\textrm{Treasury Bonds}} - R_{\textrm{Treasury Bills}}$$
where we could use, for example, the return on a constant duration portfolio of 10Y bonds to proxy for the "Treasury Bond" return. You may also here this referred to as the duration risk premium, or the reward for duration extension.