In Risk Budgeting and Diversification Based on Optimized Uncorrelated Factors [1], which introduces minimum torsion bets, Meucci gives an example involving the computation of covariance matrices on pages 9-10, Section 6, Case study: security-based investment.
[...] We estimate every month the covariance matrix of the of the [sic] S&P stock returns $\Sigma_{F}$ using a one-year rolling window of daily observations, and filtering the smallest eigenvalues to ensure positive definiteness.
What is meant by "filtering the smallest eigenvalues"? What methods are there to transform the covariance matrix in such a way that the smallest eigenvalues (and corresponding eigenvectors) get removed, but the rest stay intact, and which one is used here in particular?
Edit: This SE question [2] is highly relevant to this one.
[1] https://papers.ssrn.com/sol3/Papers.cfm?abstract_id=2276632
[2] What is the best way to "fix" a covariance matrix that is not positive semi-definite?